2015 LSP Publications

 

Glomerulonephritis-induced changes in kidney gene expression in rats. Pavkovic, M., Riefke, B., Frisk, A.-L., Gröticke, I., and Ellinger-Ziegelbauer, H. (2015a). Genom Data 6, 81–82  View PDF

An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system. AlQuraishi, M., Tang, S., and Xia, X. (2015). BMC Bioinformatics 16, 390  View PDF

Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method. Lin, J.-R., Fallahi-Sichani, M., and Sorger, P.K. (2015). Nat. Commun. 6, 8390  View PDF

Surviving apoptosis: life-death signaling in single cells. Flusberg, D.A., and Sorger, P.K. (2015). Trends Cell Biol. 25, 446–458  View PDF

Insights into Autoregulation of Notch3 from Structural and Functional Studies of Its Negative Regulatory Region. Xu, X., Choi, S.H., Hu, T., Tiyanont, K., Habets, R., Groot, A.J., Vooijs, M., Aster, J.C., Chopra, R., Fryer, C., et al. (2015). Structure 23, 1227–1235  View PDF

Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Palmer, A.C., Toprak, E., Baym, M., Kim, S., Veres, A., Bershtein, S., and Kishony, R. (2015). Nat. Commun. 6, 7385  View PDF

Glomerulonephritis-Induced Changes in Urinary and Kidney MicroRNA Profiles in Rats. Pavkovic, M., Riefke, B., Frisk, A.-L., Gröticke, I., and Ellinger-Ziegelbauer, H. (2015b). Toxicol. Sci. 145, 348–359  View PDF

Fractional killing arises from cell-to-cell variability in overcoming a caspase activity threshold. Roux, J., Hafner, M., Bandara, S., Sims, J.J., Hudson, H., Chai, D., and Sorger, P.K. (2015). Mol. Syst. Biol. 11, 803  View PDF

Extracellular poly(ADP-ribose) is a pro-inflammatory signal for macrophages. Krukenberg, K.A., Kim, S., Tan, E.S., Maliga, Z., and Mitchison, T.J. (2015). Chem. Biol. 22, 446–452  View PDF

Systematic analysis of BRAF(V600E) melanomas reveals a role for JNK/c-Jun pathway in adaptive resistance to drug-induced apoptosis. Fallahi-Sichani, M., Moerke, N.J., Niepel, M., Zhang, T., Gray, N.S., and Sorger, P.K. (2015). Mol. Syst. Biol. 11, 797  View PDF

Abundance-based classifier for the prediction of mass spectrometric peptide detectability upon enrichment (PPA). Muntel, J., Boswell, S.A., Tang, S., Ahmed, S., Wapinski, I., Foley, G., Steen, H., and Springer, M. (2015). Mol. Cell. Proteomics 14, 430–440  View PDF

Hypoxia-Mediated Increases in L-2-hydroxyglutarate Coordinate the Metabolic Response to Reductive Stress. Oldham, W.M., Clish, C.B., Yang, Y., and Loscalzo, J. (2015). Cell Metab. 22, 291–303  View PDF